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11/03/2010
- Cellvizio brings hope in Alabama
Shyam Varadarajulu, from UAB explains in the Birmingham Medical News how Cellvizio improves diagnostics, patient care and helps reduce procedures cost and time.
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Magazine Articles |
2008 |
Vercauteren, T. (2008). Fast Diffeomorphic Registration in ITK. Kitware Newsletter – The Source – October 2008, 7, 11–13. 
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2007 |
Vercauteren, T., Perchant, A., & Ayache, N. (2007). In Vivo Microscopy for Real-Time Structural and Functional Cellular Imaging. ERCIM News, 69, 34–35. 
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Peer-reviewed Publications |
2009 |
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Dru, F., & Vercauteren, T. (2009). An ITK Implementation of the Symmetric Log-Domain Diffeomorphic Demons Algorithm. Insight Journal, 2009 January - June. Notes: Available online with source code.
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Klein, A., Andersson, J., Ardekani, B. A., Ashburner, J., Avants, B., Chiang, M. - C., et al. (2009). Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. Neuroimage, 46(3), 786–802. Notes: PMID: 19195496. 
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Vercauteren, T., Pennec, X., Perchant, A., & Ayache, N. (2009). Diffeomorphic Demons: Efficient Non-parametric Image Registration. NeuroImage, 45(1S1), S61–S72. Notes: PMID: 19041946.
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Yeo, B., Sabuncu, M., Vercauteren, T., Ayache, N., Fischl, B., & Golland, P. (2009). Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration. IEEE Trans Med Imaging, [Epub ahead of print]. Notes: PMID:19709963.
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Yeo, B. T. T., Vercauteren, T., Fillard, P., Peyrat, J. - M., Pennec, X., Golland, P., et al. (2009). DT-REFinD: Diffusion Tensor Registration with Exact Finite-Strain Differential. IEEE Trans Med Imaging, 28(12), 1914–1928. Notes: PMID: 19556193.
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2007 |
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Becker, V., Vercauteren, T., von Weyern, C. H., Prinz, C., Schmid, R. M., & Meining, A. (2007). High Resolution Miniprobe-based Confocal Microscopy in Combination with Video-mosaicing. Gastrointestinal Endoscopy, 66(5), 1001–1007. Notes: PMID: 17767932.
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Linguraru, M. G., Vercauteren, T., Reyes-Aguirre, M., Gonzalez Ballester, M. A., & Ayache, N. (2007). Segmentation Propagation from Deformable Atlases for Brain Mapping and Analysis. Brain Research Journal, 1(4).
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Thiberville, L., Moreno-Swirc, S., Vercauteren, T., Peltier, E., Cavé, C., & Bourg Heckly, G. (2007). In Vivo Imaging of the Bronchial Wall Microstructure Using Fibered Confocal Fluorescence Microscopy. American Journal of Respiratory and Critical Care Medicine, 175(1), 22–31. Notes: PMID: 17023733. Chosen for the cover of the AJRCCM paper issue.
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Vercauteren, T., Pennec, X., Perchant, A., & Ayache, N. (2007). Diffeomorphic Demons Using ITK's Finite Difference Solver Hierarchy. Insight Journal, 2007 MICCAI Open Science Workshop. Notes: Available online with source code.
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2006 |
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Vercauteren, T., Perchant, A., Malandain, G., Pennec, X., & Ayache, N. (2006). Robust Mosaicing with Correction of Motion Distortions and Tissue Deformation for In Vivo Fibered Microscopy. Medical Image Analysis, 10(5), 673–692. Notes: PMID: 16887375. Annual MedIA/MICCAI Best Paper Award 2006.
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Conference Proceedings |
2010 |
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André, B., Vercauteren, T., Wallace, M. B., Buchner, A. M., & Ayache, N. (2010). Endomicroscopic video retrieval using mosaicing and visual words. In Proceedings of the Sixth IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10) (Vol. In Press, Accepted Manuscript). IEEE. Notes: To appear.
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Modat, M., Vercauteren, T., Ridgway, G. R., Hawkes, D. J., Fox, N. C., & Ourselin, S. (2010). Diffeomorphic demons using normalized mutual information, evaluation on multimodal brain MR images. In Proc. SPIE Medical Imaging (Vol. 7623).
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2009 |
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André, B., Vercauteren, T., Perchant, A., Buchner, A. M., Wallace, M. B., & Ayache, N. (2009). Endomicroscopic image retrieval and classification using invariant visual features. In Proceedings of the Sixth IEEE International Symposium on Biomedical Imaging 2009 (ISBI'09) (pp. 346–349). IEEE.
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André, B., Vercauteren, T., Perchant, A., Buchner, A. M., Wallace, M. B., & Ayache, N. (2009). Introducing space and time in local feature-based endomicroscopic image retrieval. In International Conference on Medical Image Computing and Computer Assisted Intervention – Workshop: Medical Content-based Retrieval for Clinical Decision Support. Springer.
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Sabuncu, M. R., Yeo, B. T. T., Van Leemput, K., Vercauteren, T., & Golland, P. (2009). Asymmetric Image-Template Registration. In Proceedings of the 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'09) (Vol. 5761/2009, pp. 565–573). LNCS. Springer-Verlag.
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2008 |
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Vercauteren, T., Meining, A., Lacombe, F., & Perchant, A. (2008). Real Time Autonomous Video Image Registration for Endomicroscopy: Fighting The Compromises. In J. - A. Conchello, C. J. Cogswell, & T. Wilson (Eds.), Proc. SPIE BIOS – Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XV (Vol. 6861, 68610C). San Jose, CA, USA: SPIE.
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Vercauteren, T., Pennec, X., Perchant, A., & Ayache, N. (2008). Symmetric Log-Domain Diffeomorphic Registration: A Demons-based Approach. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08) (Vol. 5241, pp. 754–761). Lecture Notes in Computer Science, 5241. New York, USA: Springer-Verlag. Notes: PMID: 18979814.
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Yeo, B. T. T., Sabuncu, M., Vercauteren, T., Ayache, N., Fischl, B., & Golland, P. (2008). Spherical Demons: Fast Surface Registration. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08) (Vol. 5241, pp. 745–753). Lecture Notes in Computer Science, 5241. New York, USA: Springer-Verlag. Notes: PMID: 18979813.
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Yeo, B. T. T., Vercauteren, T., Fillard, P., Pennec, X., Golland, P., Ayache, N., et al. (2008). DTI Registration with Exact Finite-Strain Differential. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08) (pp. 700–703). Paris, France: IEEE.
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2007 |
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Perchant, A., Vercauteren, T., Oberrietter, F., Savoire, N., & Ayache, N. (2007). Region Tracking Algorithms on Laser Scanning Devices Applied to Cell Traffic Analysis. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07) (pp. 260–263). Arlington, USA.
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Vercauteren, T., Pennec, X., Malis, E., Perchant, A., & Ayache, N. (2007). Insight Into Efficient Image Registration Techniques and the Demons Algorithm. In N. Karssemeijer, & B. P. F. Lelieveldt (Eds.), Proceedings of Information Processing in Medical Imaging (IPMI'07) (Vol. 4584, pp. 495–506). Lecture Notes in Computer Science, 4584. Kerkrade, The Netherlands: Springer-Verlag. Notes: PMID: 17633724.
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Vercauteren, T., Pennec, X., Perchant, A., & Ayache, N. (2007). Non-parametric Diffeomorphic Image Registration with the Demons Algorithm. In N. Ayache, S. Ourselin, & A. J. Maeder (Eds.), Proceedings of the 10th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'07) (Vol. 4792, pp. 319–326). Lecture Notes in Computer Science, 4792. Brisbane, Australia: Springer-Verlag. Notes: PMID: 18044584.
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2006 |
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Ayache, N., Vercauteren, T., Malandain, G., Oberrietter, F., Savoire, N., & Perchant, A. (2006). Processing and Mosaicing of Fibered Confocal Images. In MICCAI Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB'06). Notes: Invited.
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2005 |
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Vercauteren, T., Perchant, A., Pennec, X., & Ayache, N. (2005). Mosaicing of Confocal Microscopic In Vivo Soft Tissue Video Sequences. In J. S. Duncan, & G. Gerig (Eds.), Proceedings of the 8th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'05) (Vol. 3749, pp. 753–760). Lecture Notes in Computer Science, 3749. Springer-Verlag. Notes: PMID: 16685914.
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2004 |
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Le Goualher, G., Perchant, A., Genet, M., Cavé, C., Viellerobe, B., Berier, F., et al. (2004). Towards Optical Biopsies with an Integrated Fibered Confocal Fluorescence Microscope. In C. Barillot, D. R. Haynor, & P. Hellier (Eds.), Proceedings of the 7th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'04) (pp. 761–768). Lecture Notes in Computer Science, 3217. Springer-Verlag.
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Perchant, A., Le Goualher, G., Genet, M., Viellerobe, B., & Berier, F. (2004). An integrated fibered confocal microscopy system for in vivo and in situ fluorescence imaging: Applications to endoscopy in small animal imaging. In Proceedings of the IEEE International Symposium on Biomedical Imaging: Nano to Macro (ISBI'04) (Vol. 1, pp. 692–695).
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Savoire, N., Le Goualher, G., Perchant, A., Lacombe, F., Malandain, G., & Ayache, N. (2004). Measuring Blood Cells Velocity in Microvessels from a Single Image: Application to In Vivo and In Situ Confocal Microscopy. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'04) (pp. 456–459).
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Ph.D. Theses |
2008 |
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Vercauteren, T. (2008). Image Registration and Mosaicing for Dynamic In Vivo Fibered Confocal Microscopy. Ph.D. thesis, École Nationale Supérieure des Mines de Paris, Paris.
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Book Contributions |
2009 |
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Mansi, T., André, B., Lynch, M., Sermesant, M., Delingette, H., Boudjemline, Y., et al. (2009). Virtual Pulmonary Valve Replacement Interventions with a Personalised Cardiac Electromechanical Model. In Recent Advances in the 3D Physiological Human (Vol. 5528, pp. 201–210). Springer.
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2008 |
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Linguraru, M. G., Vercauteren, T., Reyes-Aguirre, M., Gonzalez Ballester, M. A., & Ayache, N. (2008). Intensity-free Segmentation of Brain Internal Nuclei from Deformable Atlases. In Brain Mapping Research Trends. New York: Nova Science Publishers. Notes: Invited – To appear.
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Vercauteren, T., Ayache, N., Savoire, N., Malandain, G., & Perchant, A. (2008). Processing of In Vivo Fibered Confocal Microscopy Video Sequences. In J. Rittscher, R. Machiraju, & S. T. C. Wong (Eds.), Microscopic Image Analysis for Life Science Applications (chap. 19, pp. 441–463). Artech House.
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Abstracts |
2009 |
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Allain, B., Price, A., Vercauteren, T., Cook, R. J., Ourselin, S., Lythgoe, M. F., et al. (2009). Precision of Confocal Miniprobe Localisation Assessed By High-Field Magnetic Resonance Imaging. In Gastrointestinal Endoscopy (Poster presentation at DDW) (Vol. 69, AB370).
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André, B., Vercauteren, T., Perchant, A., Buchner, A. M., Wallace, M. B., & Ayache, N. (2009). Endomicroscopic image retrieval and classification using invariant visual features. In International Computer Vision Summer School.
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2007 |
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Becker, V., Vercauteren, T., von Weyern, C. H., Prinz, C., Schmid, R. M., & Meining, A. (2007). Ultra-hochauflösende, sondenbasierte, konfokale Lasermikroskopie in Kombination mit Videomosaicing. In 62. Jahrestagung der Deutschen Gesellschaft für Verdauungs- und Stoffwechselkrankheiten. Zeitschrift für Gastroenterologie, 45(8). Bochum, Germany.
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Vercauteren, T., Osdoit, A., Perchant, A., & Loiseau, S. (2007). Mosaicing of Confocal Microscopic Video Sequences: Larger Field of View and still Higher Resolution. In Proceedings of the Digestive Disease Week (DDW'07) (352). Washington, DC. Notes: Abstract only.
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2006 |
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Lin, K. Y., Maricevich, M. A., Perchant, A., Loiseau, S., Weissleder, R., & Mahmood, U. (2006). Novel Imaging Method and Morphometric Analyses of Microvasculature in Live Mice Using a Fiber-optic Confocal Laser Microprobe. In Proceedings of the Radiological Society of North America (RSNA'06). Chicago, Il, USA.
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Perchant, A., Vercauteren, T., Cavé, C., & Loiseau, S. (2006). Mosaicing of Confocal Microscopic In Vivo Soft Tissue Video Sequences Improves Multimodality Approach. In Proceedings of the Radiological Society of North America (RSNA'06). Chicago, Illinois. Notes: Abstract only.
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Peer-reviewed Publications |
2007 |
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Jean, F., Bourg-Heckly, G., & Viellerobe, B. (2007). Fibered Confocal Spectroscopy and Multicolor Imaging System for In Vivo Fluorescence Analysis. Optics Express, 15(7), 4008–4017.
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Lelek, M., Suran, E., Louradour, F., Barthelemy, A., Viellerobe, B., & Lacombe, F. (2007). Coherent femtosecond pulse shaping for the optimization of a non-linear micro-endoscope. Opt. Express, 15(16), 10154–10162.
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Conference Proceedings |
2009 |
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Kennedy, G. T., Thompson, A. J., Elson, D. S., Neil, M. A. A., Stamp, G. W., Viellerobe, B., et al. (2009). Fluorescence Lifetime Imaging Through a Confocal Microendoscope. In European Conferences on Biomedical Optics (ECBO'09).
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2006 |
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Chenegros, G., Mugnier, L. M., Lacombe, F., & Glanc, M. (2006). 3D deconvolution of adaptive-optics corrected retinal images. In Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIII (Vol. 6090, 60900). SPIE.
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Glanc, M., Lafaille, D., Puget, P., Lacombe, F., Vabre, L., Levecq, X., et al. (2006). Full-field AO-assisted OCT for high-resolution tomographic imaging of the retina. In Coherence Domain Optical Methods and Optical Coherence Tomography in Biomedicine X (Vol. 6079, 607923). SPIE.
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Gruppetta, S., Lacombe, F., & Puget, P. (2006). Study of the dynamic tear film aberrations using a curvature sensing setup. In F. Manns, P. G. Soderberg, & A. Ho (Eds.), Ophthalmic Technologies XVI (Vol. 6138, 61380w). SPIE.
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Lacombe, F., Glanc, M., Gargasson, J. L., Bellmann, C., Paques, M., & Sahel, J. (2006). Direct measurements of blood cells density and velocity in retinal micro vessels. In Ophthalmic Technologies XVI (Vol. 6138, 61381). SPIE.
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Lelek, M., Louradour, F., Barthelemy, A., Viellerobe, B., & Lacombe, F. (2006). Two-Photon Fluorescence Microendoscope Using a Flexible Multicore Image Guide. In Conference on Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference and Photonic Applications Systems Technologies (Cmr5). Technical Digest (CD). Optical Society of America.
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Osdoit, A., Genet, M., Perchant, A., Loiseau, S., Abrat, B., & Lacombe, F. (2006). In vivo fibered confocal reflectance imaging: totally non-invasive morphological cellular imaging brought to the endoscopist. In G. J. Tearney, & T. D. Wang (Eds.), Endoscopic Microscopy (Vol. 6082, pp. 608208–608210). San Jose, CA, USA: SPIE.
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Viellerobe, B., Osdoit, A., Cave, C., Lacombe, F., Loiseau, S., & Abrat, B. (2006). Mauna Kea Technologies' F400 prototype: a new tool for in vivo microscopic imaging during endoscopy. In G. J. Tearney, & T. D. Wang (Eds.), Endoscopic Microscopy (Vol. 6082, 60820c). SPIE.
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2004 |
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Le Goualher, G., Perchant, A., Genet, M., Cavé, C., Viellerobe, B., Berier, F., et al. (2004). Towards Optical Biopsies with an Integrated Fibered Confocal Fluorescence Microscope. In C. Barillot, D. R. Haynor, & P. Hellier (Eds.), Proceedings of the 7th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'04) (pp. 761–768). Lecture Notes in Computer Science, 3217. Springer-Verlag.
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