Magazine Articles
|
2008
|
Vercauteren, T. (2008). Fast Diffeomorphic Registration in ITK. Kitware Newsletter – The Source – October 2008, 7, 11–13.
 |
2007
|
Vercauteren, T., Perchant, A., & Ayache, N. (2007). In Vivo Microscopy for Real-Time Structural and Functional Cellular Imaging. ERCIM News, 69, 34–35.
 |
Peer-reviewed Publications
|
2011
|
Allain, B., Hu, M., Lovat, L. B., Cook, R. J., Vercauteren, T., Ourselin, S., et al. (2011). Re-localisation of a Biopsy Site in Endoscopic Images and Characterisation of its Uncertainty. Medical Image Analysis, Epub ahead of print.
 |
André, B., Vercauteren, T., Buchner, A. M., Wallace, M. B., & Ayache, N. (2011). A Smart Atlas for Endomicroscopy using Automated Video Retrieval. Med Image Anal, 15(4), 460–476. Notes: PMID:21414833.
|
2010
|
Yeo, B., Sabuncu, M., Vercauteren, T., Ayache, N., Fischl, B., & Golland, P. (2010). Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration. IEEE Trans Med Imaging, 29(3), 650–668. Notes: PMID:19709963.
|
Yeo, B. T. T., Sabuncu, M. R., Vercauteren, T., Holt, D., Amunts, K., Zilles, K., et al. (2010). Learning Task-Optimal Registration Cost Functions for Localizing Cytoarchitecture and Function in the Cerebral Cortex. IEEE Trans Med Imaging, 29(7), 1424–1441.
|
2009
|
Dru, F., & Vercauteren, T. (2009). An ITK Implementation of the Symmetric Log-Domain Diffeomorphic Demons Algorithm. Insight Journal, 2009 January - June. Notes: Available online with source code.
|
Klein, A., Andersson, J., Ardekani, B. A., Ashburner, J., Avants, B., Chiang, M. - C., et al. (2009). Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. Neuroimage, 46(3), 786–802. Notes: PMID: 19195496.
|
Vercauteren, T., Pennec, X., Perchant, A., & Ayache, N. (2009). Diffeomorphic Demons: Efficient Non-parametric Image Registration. NeuroImage, 45(1S1), S61–S72. Notes: PMID: 19041946.
|
Yeo, B. T. T., Vercauteren, T., Fillard, P., Peyrat, J. - M., Pennec, X., Golland, P., et al. (2009). DT-REFinD: Diffusion Tensor Registration with Exact Finite-Strain Differential. IEEE Trans Med Imaging, 28(12), 1914–1928. Notes: PMID: 19556193.
|
2007
|
Becker, V., Vercauteren, T., von Weyern, C. H., Prinz, C., Schmid, R. M., & Meining, A. (2007). High Resolution Miniprobe-based Confocal Microscopy in Combination with Video-mosaicing. Gastrointestinal Endoscopy, 66(5), 1001–1007. Notes: PMID: 17767932.
|
Linguraru, M. G., Vercauteren, T., Reyes-Aguirre, M., Gonzalez Ballester, M. A., & Ayache, N. (2007). Segmentation Propagation from Deformable Atlases for Brain Mapping and Analysis. Brain Research Journal, 1(4).
|
Thiberville, L., Moreno-Swirc, S., Vercauteren, T., Peltier, E., Cavé, C., & Bourg Heckly, G. (2007). In Vivo Imaging of the Bronchial Wall Microstructure Using Fibered Confocal Fluorescence Microscopy. American Journal of Respiratory and Critical Care Medicine, 175(1), 22–31. Notes: PMID: 17023733. Chosen for the cover of the AJRCCM paper issue.
|
Vercauteren, T., Pennec, X., Perchant, A., & Ayache, N. (2007). Diffeomorphic Demons Using ITK's Finite Difference Solver Hierarchy. Insight Journal, 2007 MICCAI Open Science Workshop. Notes: Available online with source code.
|
2006
|
Vercauteren, T., Perchant, A., Malandain, G., Pennec, X., & Ayache, N. (2006). Robust Mosaicing with Correction of Motion Distortions and Tissue Deformation for In Vivo Fibered Microscopy. Medical Image Analysis, 10(5), 673–692. Notes: PMID: 16887375. Annual MedIA/MICCAI Best Paper Award 2006.
|
Conference Proceedings
|
2011
|
André, B., Vercauteren, T., & Ayache, N. (2011). Content-Based Retrieval in Endomicroscopy: Toward an Efficient Smart Atlas for Clinical Diagnosis. In Medical Content-based Retrieval for Clinical Decision Support 2011 (Vol. Epub ahead of print).
|
André, B., Vercauteren, T., Buchner, A. M., Wallace, M. B., & Ayache, N. (2011). Retrieval evaluation and distance learning from perceived similarity between endomicroscopy videos. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'11) (Vol. 6891, pp. 289–296). Notes: PMID:22003712.
|
2010
|
Allain, B., Hu, M., Lovat, L., Cook, R., Vercauteren, T., Ourselin, S., et al. (2010). A System for Biopsy Site Re-targeting with Uncertainty in Gastroenterology and Oropharyngeal Examinations. In T. Jiang, N. Navab, J. Pluim, & M. Viergever (Eds.), Medical Image Computing and Computer-Assisted Intervention – MICCAI 2010 (Vol. 6362, pp. 514–521). Lecture Notes in Computer Science, 6362. Springer Berlin / Heidelberg. Notes: PMID: 20879354.
|
André, B., Vercauteren, T., Buchner, A. M., Shahid, M. W., Wallace, M. B., & Ayache, N. (2010). An image retrieval approach to setup difficulty levels in training systems for endomicroscopy diagnosis. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'10) (Vol. 6362, pp. 480–487). Notes: PMID: 20879350.
|
André, B., Vercauteren, T., Wallace, M. B., Buchner, A. M., & Ayache, N. (2010). Endomicroscopic video retrieval using mosaicing and visual words. In Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10) (pp. 1419–1422). IEEE. Notes: To appear.
|
André, B., Vercauteren, T., Perchant, A., Buchner, A. M., Wallace, M. B., & Ayache, N. (2010). Introducing space and time in local feature-based endomicroscopic image retrieval. In International Conference on Medical Image Computing and Computer Assisted Intervention – Workshop: Medical Content-based Retrieval for Clinical Decision Support (Vol. 5853/2010, pp. 18–30). Springer Berlin / Heidelberg.
|
Garcia, V., Vercauteren, T., Malandain, G., & Ayache, N. (2010). Diffeomorphic demons and the EMPIRE10 challenge. In Grand Challenges in Medical Image Analysis (EMPIRE10 MICCAI'10 Workshop) (pp. 91–98).
|
Modat, M., Vercauteren, T., Ridgway, G. R., Hawkes, D. J., Fox, N. C., & Ourselin, S. (2010). Diffeomorphic demons using normalized mutual information, evaluation on multimodal brain MR images. In Proc. SPIE Medical Imaging (Vol. 7623, 76232K).
|
2009
|
André, B., Vercauteren, T., Perchant, A., Buchner, A. M., Wallace, M. B., & Ayache, N. (2009). Endomicroscopic image retrieval and classification using invariant visual features. In Proceedings of the Sixth IEEE International Symposium on Biomedical Imaging 2009 (ISBI'09) (pp. 346–349). IEEE.
|
Sabuncu, M. R., Yeo, B. T. T., Van Leemput, K., Vercauteren, T., & Golland, P. (2009). Asymmetric Image-Template Registration. In Proceedings of the 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'09) (Vol. 5761/2009, pp. 565–573). LNCS. Springer-Verlag. Notes: PMID: 20426033.
|
2008
|
Vercauteren, T., Meining, A., Lacombe, F., & Perchant, A. (2008). Real Time Autonomous Video Image Registration for Endomicroscopy: Fighting The Compromises. In J. - A. Conchello, C. J. Cogswell, & T. Wilson (Eds.), Proc. SPIE BIOS – Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XV (Vol. 6861, 68610C). San Jose, CA, USA: SPIE.
|
Vercauteren, T., Pennec, X., Perchant, A., & Ayache, N. (2008). Symmetric Log-Domain Diffeomorphic Registration: A Demons-based Approach. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08) (Vol. 5241, pp. 754–761). Lecture Notes in Computer Science, 5241. New York, USA: Springer-Verlag. Notes: PMID: 18979814.
|
Yeo, B. T. T., Sabuncu, M., Vercauteren, T., Ayache, N., Fischl, B., & Golland, P. (2008). Spherical Demons: Fast Surface Registration. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08) (Vol. 5241, pp. 745–753). Lecture Notes in Computer Science, 5241. New York, USA: Springer-Verlag. Notes: PMID: 18979813.
|
Yeo, B. T. T., Vercauteren, T., Fillard, P., Pennec, X., Golland, P., Ayache, N., et al. (2008). DTI Registration with Exact Finite-Strain Differential. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08) (pp. 700–703). Paris, France: IEEE.
|
2007
|
Vercauteren, T., Pennec, X., Malis, E., Perchant, A., & Ayache, N. (2007). Insight Into Efficient Image Registration Techniques and the Demons Algorithm. In N. Karssemeijer, & B. P. F. Lelieveldt (Eds.), Proceedings of Information Processing in Medical Imaging (IPMI'07) (Vol. 4584, pp. 495–506). Lecture Notes in Computer Science, 4584. Kerkrade, The Netherlands: Springer-Verlag. Notes: PMID: 17633724.
|
Vercauteren, T., Pennec, X., Perchant, A., & Ayache, N. (2007). Non-parametric Diffeomorphic Image Registration with the Demons Algorithm. In N. Ayache, S. Ourselin, & A. J. Maeder (Eds.), Proceedings of the 10th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'07) (Vol. 4792, pp. 319–326). Lecture Notes in Computer Science, 4792. Brisbane, Australia: Springer-Verlag. Notes: PMID: 18044584.
|
2004
|
Le Goualher, G., Perchant, A., Genet, M., Cavé, C., Viellerobe, B., Berier, F., et al. (2004). Towards Optical Biopsies with an Integrated Fibered Confocal Fluorescence Microscope. In C. Barillot, D. R. Haynor, & P. Hellier (Eds.), Proceedings of the 7th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'04) (pp. 761–768). Lecture Notes in Computer Science, 3217. Springer-Verlag.
|
Perchant, A., Le Goualher, G., Genet, M., Viellerobe, B., & Berier, F. (2004). An integrated fibered confocal microscopy system for in vivo and in situ fluorescence imaging: Applications to endoscopy in small animal imaging. In Proceedings of the IEEE International Symposium on Biomedical Imaging: Nano to Macro (ISBI'04) (Vol. 1, pp. 692–695).
|
