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11/03/2010
- Cellvizio apporte de l'espoir en Alabama
Shyam Varadarajulu, de l'Université d'Alabama, explique dans le Birmingham Medical News en quoi Cellvizio améliore le diagnostic, le traitement des patients et permet de réduire le coût et la durée des procédures.
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Magazine Articles |
2008 |
Vercauteren, T. (2008). Fast Diffeomorphic Registration in ITK. Kitware Newsletter – The Source – October 2008, 7, 11–13. 
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2007 |
Vercauteren, T., Perchant, A., & Ayache, N. (2007). In Vivo Microscopy for Real-Time Structural and Functional Cellular Imaging. ERCIM News, 69, 34–35. 
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Peer-reviewed Publications |
2009 |
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Dru, F., & Vercauteren, T. (2009). An ITK Implementation of the Symmetric Log-Domain Diffeomorphic Demons Algorithm. Insight Journal, 2009 January - June. Notes: Available online with source code.
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Klein, A., Andersson, J., Ardekani, B. A., Ashburner, J., Avants, B., Chiang, M. - C., et al. (2009). Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. Neuroimage, 46(3), 786–802. Notes: PMID: 19195496. 
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Vercauteren, T., Pennec, X., Perchant, A., & Ayache, N. (2009). Diffeomorphic Demons: Efficient Non-parametric Image Registration. NeuroImage, 45(1S1), S61–S72. Notes: PMID: 19041946.
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Yeo, B., Sabuncu, M., Vercauteren, T., Ayache, N., Fischl, B., & Golland, P. (2009). Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration. IEEE Trans Med Imaging, [Epub ahead of print]. Notes: PMID:19709963.
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Yeo, B. T. T., Vercauteren, T., Fillard, P., Peyrat, J. - M., Pennec, X., Golland, P., et al. (2009). DT-REFinD: Diffusion Tensor Registration with Exact Finite-Strain Differential. IEEE Trans Med Imaging, 28(12), 1914–1928. Notes: PMID: 19556193.
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2007 |
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Becker, V., Vercauteren, T., von Weyern, C. H., Prinz, C., Schmid, R. M., & Meining, A. (2007). High Resolution Miniprobe-based Confocal Microscopy in Combination with Video-mosaicing. Gastrointestinal Endoscopy, 66(5), 1001–1007. Notes: PMID: 17767932.
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Linguraru, M. G., Vercauteren, T., Reyes-Aguirre, M., Gonzalez Ballester, M. A., & Ayache, N. (2007). Segmentation Propagation from Deformable Atlases for Brain Mapping and Analysis. Brain Research Journal, 1(4).
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Thiberville, L., Moreno-Swirc, S., Vercauteren, T., Peltier, E., Cavé, C., & Bourg Heckly, G. (2007). In Vivo Imaging of the Bronchial Wall Microstructure Using Fibered Confocal Fluorescence Microscopy. American Journal of Respiratory and Critical Care Medicine, 175(1), 22–31. Notes: PMID: 17023733. Chosen for the cover of the AJRCCM paper issue.
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Vercauteren, T., Pennec, X., Perchant, A., & Ayache, N. (2007). Diffeomorphic Demons Using ITK's Finite Difference Solver Hierarchy. Insight Journal, 2007 MICCAI Open Science Workshop. Notes: Available online with source code.
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2006 |
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Vercauteren, T., Perchant, A., Malandain, G., Pennec, X., & Ayache, N. (2006). Robust Mosaicing with Correction of Motion Distortions and Tissue Deformation for In Vivo Fibered Microscopy. Medical Image Analysis, 10(5), 673–692. Notes: PMID: 16887375. Annual MedIA/MICCAI Best Paper Award 2006.
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Conference Proceedings |
2010 |
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André, B., Vercauteren, T., Wallace, M. B., Buchner, A. M., & Ayache, N. (2010). Endomicroscopic video retrieval using mosaicing and visual words. In Proceedings of the Sixth IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10) (Vol. In Press, Accepted Manuscript). IEEE. Notes: To appear.
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Modat, M., Vercauteren, T., Ridgway, G. R., Hawkes, D. J., Fox, N. C., & Ourselin, S. (2010). Diffeomorphic demons using normalized mutual information, evaluation on multimodal brain MR images. In Proc. SPIE Medical Imaging (Vol. 7623).
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2009 |
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André, B., Vercauteren, T., Perchant, A., Buchner, A. M., Wallace, M. B., & Ayache, N. (2009). Endomicroscopic image retrieval and classification using invariant visual features. In Proceedings of the Sixth IEEE International Symposium on Biomedical Imaging 2009 (ISBI'09) (pp. 346–349). IEEE.
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André, B., Vercauteren, T., Perchant, A., Buchner, A. M., Wallace, M. B., & Ayache, N. (2009). Introducing space and time in local feature-based endomicroscopic image retrieval. In International Conference on Medical Image Computing and Computer Assisted Intervention – Workshop: Medical Content-based Retrieval for Clinical Decision Support. Springer.
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Sabuncu, M. R., Yeo, B. T. T., Van Leemput, K., Vercauteren, T., & Golland, P. (2009). Asymmetric Image-Template Registration. In Proceedings of the 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'09) (Vol. 5761/2009, pp. 565–573). LNCS. Springer-Verlag.
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2008 |
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Vercauteren, T., Meining, A., Lacombe, F., & Perchant, A. (2008). Real Time Autonomous Video Image Registration for Endomicroscopy: Fighting The Compromises. In J. - A. Conchello, C. J. Cogswell, & T. Wilson (Eds.), Proc. SPIE BIOS – Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XV (Vol. 6861, 68610C). San Jose, CA, USA: SPIE.
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Vercauteren, T., Pennec, X., Perchant, A., & Ayache, N. (2008). Symmetric Log-Domain Diffeomorphic Registration: A Demons-based Approach. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08) (Vol. 5241, pp. 754–761). Lecture Notes in Computer Science, 5241. New York, USA: Springer-Verlag. Notes: PMID: 18979814.
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Yeo, B. T. T., Sabuncu, M., Vercauteren, T., Ayache, N., Fischl, B., & Golland, P. (2008). Spherical Demons: Fast Surface Registration. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08) (Vol. 5241, pp. 745–753). Lecture Notes in Computer Science, 5241. New York, USA: Springer-Verlag. Notes: PMID: 18979813.
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Yeo, B. T. T., Vercauteren, T., Fillard, P., Pennec, X., Golland, P., Ayache, N., et al. (2008). DTI Registration with Exact Finite-Strain Differential. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08) (pp. 700–703). Paris, France: IEEE.
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2007 |
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Perchant, A., Vercauteren, T., Oberrietter, F., Savoire, N., & Ayache, N. (2007). Region Tracking Algorithms on Laser Scanning Devices Applied to Cell Traffic Analysis. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07) (pp. 260–263). Arlington, USA.
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Vercauteren, T., Pennec, X., Malis, E., Perchant, A., & Ayache, N. (2007). Insight Into Efficient Image Registration Techniques and the Demons Algorithm. In N. Karssemeijer, & B. P. F. Lelieveldt (Eds.), Proceedings of Information Processing in Medical Imaging (IPMI'07) (Vol. 4584, pp. 495–506). Lecture Notes in Computer Science, 4584. Kerkrade, The Netherlands: Springer-Verlag. Notes: PMID: 17633724.
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Vercauteren, T., Pennec, X., Perchant, A., & Ayache, N. (2007). Non-parametric Diffeomorphic Image Registration with the Demons Algorithm. In N. Ayache, S. Ourselin, & A. J. Maeder (Eds.), Proceedings of the 10th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'07) (Vol. 4792, pp. 319–326). Lecture Notes in Computer Science, 4792. Brisbane, Australia: Springer-Verlag. Notes: PMID: 18044584.
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2006 |
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Ayache, N., Vercauteren, T., Malandain, G., Oberrietter, F., Savoire, N., & Perchant, A. (2006). Processing and Mosaicing of Fibered Confocal Images. In MICCAI Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB'06). Notes: Invited.
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2005 |
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Vercauteren, T., Perchant, A., Pennec, X., & Ayache, N. (2005). Mosaicing of Confocal Microscopic In Vivo Soft Tissue Video Sequences. In J. S. Duncan, & G. Gerig (Eds.), Proceedings of the 8th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'05) (Vol. 3749, pp. 753–760). Lecture Notes in Computer Science, 3749. Springer-Verlag. Notes: PMID: 16685914.
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2004 |
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Le Goualher, G., Perchant, A., Genet, M., Cavé, C., Viellerobe, B., Berier, F., et al. (2004). Towards Optical Biopsies with an Integrated Fibered Confocal Fluorescence Microscope. In C. Barillot, D. R. Haynor, & P. Hellier (Eds.), Proceedings of the 7th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'04) (pp. 761–768). Lecture Notes in Computer Science, 3217. Springer-Verlag.
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Perchant, A., Le Goualher, G., Genet, M., Viellerobe, B., & Berier, F. (2004). An integrated fibered confocal microscopy system for in vivo and in situ fluorescence imaging: Applications to endoscopy in small animal imaging. In Proceedings of the IEEE International Symposium on Biomedical Imaging: Nano to Macro (ISBI'04) (Vol. 1, pp. 692–695).
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Savoire, N., Le Goualher, G., Perchant, A., Lacombe, F., Malandain, G., & Ayache, N. (2004). Measuring Blood Cells Velocity in Microvessels from a Single Image: Application to In Vivo and In Situ Confocal Microscopy. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'04) (pp. 456–459).
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Ph.D. Theses |
2008 |
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Vercauteren, T. (2008). Image Registration and Mosaicing for Dynamic In Vivo Fibered Confocal Microscopy. Ph.D. thesis, École Nationale Supérieure des Mines de Paris, Paris.
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Book Contributions |
2009 |
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Mansi, T., André, B., Lynch, M., Sermesant, M., Delingette, H., Boudjemline, Y., et al. (2009). Virtual Pulmonary Valve Replacement Interventions with a Personalised Cardiac Electromechanical Model. In Recent Advances in the 3D Physiological Human (Vol. 5528, pp. 201–210). Springer.
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2008 |
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Linguraru, M. G., Vercauteren, T., Reyes-Aguirre, M., Gonzalez Ballester, M. A., & Ayache, N. (2008). Intensity-free Segmentation of Brain Internal Nuclei from Deformable Atlases. In Brain Mapping Research Trends. New York: Nova Science Publishers. Notes: Invited – To appear.
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Vercauteren, T., Ayache, N., Savoire, N., Malandain, G., & Perchant, A. (2008). Processing of In Vivo Fibered Confocal Microscopy Video Sequences. In J. Rittscher, R. Machiraju, & S. T. C. Wong (Eds.), Microscopic Image Analysis for Life Science Applications (chap. 19, pp. 441–463). Artech House.
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Abstracts |
2009 |
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Allain, B., Price, A., Vercauteren, T., Cook, R. J., Ourselin, S., Lythgoe, M. F., et al. (2009). Precision of Confocal Miniprobe Localisation Assessed By High-Field Magnetic Resonance Imaging. In Gastrointestinal Endoscopy (Poster presentation at DDW) (Vol. 69, AB370).
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André, B., Vercauteren, T., Perchant, A., Buchner, A. M., Wallace, M. B., & Ayache, N. (2009). Endomicroscopic image retrieval and classification using invariant visual features. In International Computer Vision Summer School.
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2007 |
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Becker, V., Vercauteren, T., von Weyern, C. H., Prinz, C., Schmid, R. M., & Meining, A. (2007). Ultra-hochauflösende, sondenbasierte, konfokale Lasermikroskopie in Kombination mit Videomosaicing. In 62. Jahrestagung der Deutschen Gesellschaft für Verdauungs- und Stoffwechselkrankheiten. Zeitschrift für Gastroenterologie, 45(8). Bochum, Germany.
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Vercauteren, T., Osdoit, A., Perchant, A., & Loiseau, S. (2007). Mosaicing of Confocal Microscopic Video Sequences: Larger Field of View and still Higher Resolution. In Proceedings of the Digestive Disease Week (DDW'07) (352). Washington, DC. Notes: Abstract only.
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2006 |
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Lin, K. Y., Maricevich, M. A., Perchant, A., Loiseau, S., Weissleder, R., & Mahmood, U. (2006). Novel Imaging Method and Morphometric Analyses of Microvasculature in Live Mice Using a Fiber-optic Confocal Laser Microprobe. In Proceedings of the Radiological Society of North America (RSNA'06). Chicago, Il, USA.
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Perchant, A., Vercauteren, T., Cavé, C., & Loiseau, S. (2006). Mosaicing of Confocal Microscopic In Vivo Soft Tissue Video Sequences Improves Multimodality Approach. In Proceedings of the Radiological Society of North America (RSNA'06). Chicago, Illinois. Notes: Abstract only.
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Peer-reviewed Publications |
2007 |
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Jean, F., Bourg-Heckly, G., & Viellerobe, B. (2007). Fibered Confocal Spectroscopy and Multicolor Imaging System for In Vivo Fluorescence Analysis. Optics Express, 15(7), 4008–4017.
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Lelek, M., Suran, E., Louradour, F., Barthelemy, A., Viellerobe, B., & Lacombe, F. (2007). Coherent femtosecond pulse shaping for the optimization of a non-linear micro-endoscope. Opt. Express, 15(16), 10154–10162.
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Conference Proceedings |
2009 |
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Kennedy, G. T., Thompson, A. J., Elson, D. S., Neil, M. A. A., Stamp, G. W., Viellerobe, B., et al. (2009). Fluorescence Lifetime Imaging Through a Confocal Microendoscope. In European Conferences on Biomedical Optics (ECBO'09).
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2006 |
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Chenegros, G., Mugnier, L. M., Lacombe, F., & Glanc, M. (2006). 3D deconvolution of adaptive-optics corrected retinal images. In Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIII (Vol. 6090, 60900). SPIE.
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Glanc, M., Lafaille, D., Puget, P., Lacombe, F., Vabre, L., Levecq, X., et al. (2006). Full-field AO-assisted OCT for high-resolution tomographic imaging of the retina. In Coherence Domain Optical Methods and Optical Coherence Tomography in Biomedicine X (Vol. 6079, 607923). SPIE.
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Gruppetta, S., Lacombe, F., & Puget, P. (2006). Study of the dynamic tear film aberrations using a curvature sensing setup. In F. Manns, P. G. Soderberg, & A. Ho (Eds.), Ophthalmic Technologies XVI (Vol. 6138, 61380w). SPIE.
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Lacombe, F., Glanc, M., Gargasson, J. L., Bellmann, C., Paques, M., & Sahel, J. (2006). Direct measurements of blood cells density and velocity in retinal micro vessels. In Ophthalmic Technologies XVI (Vol. 6138, 61381). SPIE.
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Lelek, M., Louradour, F., Barthelemy, A., Viellerobe, B., & Lacombe, F. (2006). Two-Photon Fluorescence Microendoscope Using a Flexible Multicore Image Guide. In Conference on Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference and Photonic Applications Systems Technologies (Cmr5). Technical Digest (CD). Optical Society of America.
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Osdoit, A., Genet, M., Perchant, A., Loiseau, S., Abrat, B., & Lacombe, F. (2006). In vivo fibered confocal reflectance imaging: totally non-invasive morphological cellular imaging brought to the endoscopist. In G. J. Tearney, & T. D. Wang (Eds.), Endoscopic Microscopy (Vol. 6082, pp. 608208–608210). San Jose, CA, USA: SPIE.
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Viellerobe, B., Osdoit, A., Cave, C., Lacombe, F., Loiseau, S., & Abrat, B. (2006). Mauna Kea Technologies' F400 prototype: a new tool for in vivo microscopic imaging during endoscopy. In G. J. Tearney, & T. D. Wang (Eds.), Endoscopic Microscopy (Vol. 6082, 60820c). SPIE.
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2004 |
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Le Goualher, G., Perchant, A., Genet, M., Cavé, C., Viellerobe, B., Berier, F., et al. (2004). Towards Optical Biopsies with an Integrated Fibered Confocal Fluorescence Microscope. In C. Barillot, D. R. Haynor, & P. Hellier (Eds.), Proceedings of the 7th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'04) (pp. 761–768). Lecture Notes in Computer Science, 3217. Springer-Verlag.
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